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	<front>
		<journal-meta>
			<journal-id journal-id-type="publisher-id">SCIENTIA MARINA</journal-id>
			<journal-title-group>
				<journal-title>Scientia Marina</journal-title>
				<abbrev-journal-title>Sci Mar</abbrev-journal-title>
			</journal-title-group>
			<issn pub-type="epub">0214-8358</issn>
			<publisher>
				<publisher-name>Consejo Superior de Investigaciones Científicas</publisher-name>
			</publisher>
		</journal-meta>
		<article-meta>
			 <article-id pub-id-type="publisher-id">sm4322</article-id>
			 <article-id pub-id-type="doi">10.3989/scimar.04322.05A</article-id>
			 
			
		<title-group>
			  <article-title>Fine-scale water mass variability inside a narrow submarine canyon (the Besòs Canyon) in the NW Mediterranean Sea</article-title>
		<trans-title-group xml:lang="es">
		<trans-title>Variabilidad de las masas de agua a pequeña escala en un cañón submarino (cañón del Besòs) en el NO del mar Mediterráneo</trans-title>
		</trans-title-group>
		<alt-title alt-title-type="running-head">Water mass variability in a submarine canyon</alt-title>
		</title-group>

		<contrib-group>
			<contrib contrib-type="issue-editor"> 
				<name>
				 <surname>Pelegrí</surname>
				 <given-names>Josep L.</given-names>
				</name>
				<role>Special Issue Editor</role>
				</contrib>
			<contrib contrib-type="issue-editor"> 
				<name>
				 <surname>Vaqué</surname>
				 <given-names>Dolors</given-names>
				</name>
				<role>Special Issue Editor</role>
				</contrib>
		</contrib-group>
		
		<contrib-group>
			  <contrib contrib-type="author" corresp="yes"> 
				<name>
				 <surname>Jordi</surname>
				 <given-names>Solé</given-names>
				</name>
				<xref ref-type="aff" rid="U1"/>
				<xref ref-type="corresp" rid="cor1"/>
			  </contrib>
 			 <contrib contrib-type="author" corresp="no"> 
				<name>
				 <surname>Emelianov</surname>
				 <given-names>Mikhail</given-names>
				</name>
				<xref ref-type="aff" rid="U1"/>
			  </contrib>			 
			   <contrib contrib-type="author" corresp="no"> 
				<name>
				 <surname>Ostrovskii</surname>
				 <given-names>Alexander</given-names>
				</name>
				<xref ref-type="aff" rid="U2"/>
			  </contrib>
			  <contrib contrib-type="author" corresp="no"> 
				<name>
				 <surname>Puig</surname>
				 <given-names>Pere</given-names>
				</name>
				<xref ref-type="aff" rid="U1"/>
			  </contrib>
			  <contrib contrib-type="author" corresp="no"> 
				<name>
				 <surname>García-Ladona</surname>
				 <given-names>Emilio</given-names>
				</name>
				<xref ref-type="aff" rid="U1"/>
			  </contrib>
			  <aff id="U1">Institut de Ciències del Mar, CSIC, Passeig marítim de la Barceloneta 37-49.08003. Barcelona, Spain.</aff>
			  <aff id="U2">P.P. Shirshov Institute of Oceanology, Russian Academy of Sciences Nakhimovsky prosp., 36, Moscow 117997, Russia.</aff>
			 </contrib-group>
			 
			 <author-notes>
		<corresp id="cor1">e-mail: <email xlink:href="jsole@icm.csic.es">jsole@icm.csic.es</email>
		</corresp>
		</author-notes>
		
<pub-date pub-type="epub">
		<day>30</day>
		<month>09</month>
		<year>2016</year>
		</pub-date>
		<pub-date pub-type="collection">
		<year>2016</year>
		</pub-date>
		
		<volume>80S1</volume>
		<issue>Suppl. 1</issue>
		<issue-title>Planet Ocean</issue-title>
		<fpage>195</fpage>
		<lpage>204</lpage>
		
		<elocation-id content-type="doi">10.3989/scimar.04322.05A</elocation-id>

		 <history>
		  	<date date-type="received">
				<day>27</day>
				<month>7</month>
				<year>2015</year>
			</date>
			<date date-type="accepted">
				<day>26</day>
				<month>4</month>
				<year>2016</year>
			</date>
			<date date-type="published">
				<day>30</day>
				<month>9</month>
				<year>2016</year>
			</date>
		 </history>
		 
		<permissions>
		<copyright-statement>&#x00A9; 2016 CSIC</copyright-statement>
		<copyright-year>2016</copyright-year>
		<license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by/3.0/">
		<license-p>This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-by) Spain 3.0 License.</license-p>
		</license>
		</permissions>
		
		<abstract xml:lang="en">
		<title>SUMMARY</title>
		<p>In this work we report short-term measurements of the thermohaline structure and velocity field inside a narrow submarine canyon by means of a yo-yo–like profiler. An Aqualog profiler was deployed inside the Besòs Canyon in the northwestern Mediterranean continental margin, providing a unique data set on the vertical evolution of water column characteristics with unprecedented fine-scale spatial and temporal resolution. The observations reported here show a very dynamic transient short-term response with a complex vertical structure not observed previously in any submarine canyon of this region. The vertical distribution of water masses was characteristic of the western Mediterranean basin with Atlantic waters (AW) at the surface, Western Intermediate waters (WIW) in the middle and Levantine Intermediate (LIW) waters below. Turner angle and empirical orthogonal functions show that double-diffusive and isopycnal mixing are the main dominant processes at small scales. The interfaces of the three layers exhibit highly vertical excursions in relatively short times. At the surface, deepening of AW was observed, associated with flow intensification events. Deeper in the water column, within the submarine canyon confinement, the WIW-LIW interface uplifts about 100-150 m. These motions are associated with relatively up- and down-canyon–enhanced current events (up to 15-20 cm s<sup>–1</sup> at 500 and 800 m depths) along the canyon axis. The time scales of the vertical variability were concentrated in a broad band around the semi-diurnal and local inertial frequencies within the WIW and LIW layers. </p>
		</abstract>
		<trans-abstract xml:lang="es">
		<title>RESUMEN</title>
		<p>En este trabajo se muestran medidas a corto plazo de la estructura termohalina y del campo de velocidad dentro de un estrecho cañón submarino a través de un perfilador tipo yo-yo. Este perfilador Aqualog se desplegó dentro del cañón del Besòs en el noroeste del margen continental del Mediterráneo, proporcionando un conjunto de datos único sobre la evolución vertical de las características de la columna de agua, con una resolución espacial y temporal a escala fina sin precedentes. Las observaciones aportadas aquí muestran una respuesta de un periodo transitorio muy dinámico con una estructura vertical compleja no observada anteriormente en ningún cañón submarino de esta región. La distribución vertical de las masas de agua es característica de la cuenca mediterránea occidental con aguas del Atlántico (AW) en la superficie, aguas occidentales Intermedias (WIW) debajo de estas y aguas de Levante Intermedio (LIW) por debajo. Los ángulos de Turner calculados y sus EOFs muestran que la estabilidad a la difusión y mezcla isopicna son los principales procesos dominantes a escalas pequeñas. Las interfaces de las tres capas exhiben excursiones notablemente verticales en tiempos relativamente cortos. En la superficie, la profundización de AW se observó asociada a eventos de intensificación del flujo. A más profundidad en la columna de agua, dentro del régimen de cañón submarino, la interfase WIW-LIW se eleva unos 100-150 m. Tales movimientos se asocian al flujo de agua hacia arriba y hacia abajo del cañón (hasta 15-20 cm s<sup>–1</sup> a 500 y 800 m de profundidad) a lo largo del eje del cañón. Las escalas de tiempo de variabilidad vertical aparecen concentradas en una amplia banda de frecuencias alrededor de los periodos inerciales semidiurnos y locales dentro de las capas WIW y LIW.</p>
		</trans-abstract>
		<kwd-group xml:lang="en">
			<title>KEYWORDS</title>
			<kwd>fine-scale variability</kwd>
			<kwd>submarine canyon</kwd>
			<kwd>yo-yo like profiler</kwd>
			<kwd>thermohaline structure</kwd>
			<kwd>AW</kwd>
			<kwd>WIW</kwd>			
			<kwd>LIW</kwd>			
		</kwd-group>
		<kwd-group xml:lang="es">
			<title>PALABRAS CLAVE</title>
			<kwd>variabilidad de pequeña escala</kwd>
			<kwd>cañón submarino</kwd>
			<kwd>perfilador tipo yo-yo</kwd>
			<kwd>estructura termohalina</kwd>
			<kwd>AW</kwd>			
			<kwd>WIW</kwd>
			<kwd>LIW</kwd>
		</kwd-group>
	 </article-meta>
	</front>
	<body>
			<sec id="S1">
<title>INTRODUCTION</title>
			
			<p>The hydrodynamics of coastal water masses have different impacts on oceanographic processes occurring on continental margins (<xref ref-type="bibr" rid="CIT16">Huthnance 1995</xref>). Particularly in continental shelf and slope areas, shelf-edge physical processes and interactions between flow dynamics and bathymetry have a strong influence on upwelling/downwelling mechanisms and/or cross-margin water and particulate matter exchanges (<xref ref-type="bibr" rid="CIT14">Hickey 1997</xref>, <xref ref-type="bibr" rid="CIT51">Spurgin and Allen 2014</xref>). Submarine canyons can modify the water mass behaviour and enhance cross-margin particle fluxes, and can consequently have a major impact on sedimentary and biological processes (<xref ref-type="bibr" rid="CIT13">Gili et al. 1998</xref>, <xref ref-type="bibr" rid="CIT33">Palanques et al. 2005</xref>, <xref ref-type="bibr" rid="CIT01">Allen and Durrieu de Madron 2009</xref>, <xref ref-type="bibr" rid="CIT42">Puig et al. 2014</xref>). The hydrodynamics in submarine canyons depends upon several forcing conditions, such as general circulation, tidal regime, bottom morphology and atmospheric patterns. However, forcing conditions differ among canyons and can give different responses. Therefore, a detailed monitoring of oceanographic features that may be present in canyon hydrodynamics is needed to properly understand canyon water mass behaviour.</p>
			<p>In this work, we will focus on the detailed hydrodynamics of a submarine canyon (the Besòs Canyon) that is deeply incised in the continental slope of the NW Mediterranean continental margin (<xref ref-type="bibr" rid="CIT03">Canals et al. 2013</xref>). The thermohaline structure and dynamics of water masses in this particular area is composed of a three-layer system (<xref ref-type="bibr" rid="CIT15">Hopkins 1978</xref>, <xref ref-type="bibr" rid="CIT47">Salat and Cruzado 1981</xref>, <xref ref-type="bibr" rid="CIT49">Salat et al. 2002</xref>). In the first layer, from the surface to 150-300 m, modified Atlantic Water (AW) is generally found. This water mass comes from the Gibraltar Strait and is transformed and modified as it spreads and circulates cyclonically around the western Mediterranean basin. The second layer is formed by Western Intermediate Water (WIW) (<xref ref-type="bibr" rid="CIT21">Lacombe and Tchernia 1972</xref>, <xref ref-type="bibr" rid="CIT48">Salat and Font 1987</xref>, <xref ref-type="bibr" rid="CIT37">Pinot and Ganachaud 1999</xref>) and is located between 300-600 m. The WIW forms by winter convection in the region of the Gulf of Lions and shows potential temperatures of 12.51°C to 12.81°C and salinities of 38.1 to 38.3, respectively. Below, a third layer between 600 and 800 m is occupied by the Levantine Intermediate Water (LIW), with potential temperatures of 13.0°C to 13.41°C and salinities of 38.48-38.54, respectively (<xref ref-type="bibr" rid="CIT32">Ovchinnikov et al. 1976</xref>, <xref ref-type="bibr" rid="CIT09">Font 1987</xref>, <xref ref-type="bibr" rid="CIT29">Millot 1999</xref>). </p>
			<p>The oceanographic conditions at the surface are characterized by the presence of a quasi-permanent frontal current: the Liguro-Provençal-Catalan Current or Northern Current along the shelf-slope (e.g. <xref ref-type="bibr" rid="CIT10">Font et al. 1988</xref>, <xref ref-type="bibr" rid="CIT25">Masó and Tintoré 1991</xref>, <xref ref-type="bibr" rid="CIT38">Pinot et al. 1995</xref>, <xref ref-type="bibr" rid="CIT29">Millot 1999</xref>, <xref ref-type="bibr" rid="CIT39">Pinot et al. 2002</xref>). This current is associated with a baroclinic front, which separates fresh coastal waters, mainly from the Rhône and Ebro Rivers, from saltier open sea water in the deeper areas of the basin (<xref ref-type="bibr" rid="CIT10">Font et al. 1988</xref>). Analysis of altimetry, infrared satellite images and in situ observations has revealed a significant annual and seasonal variability of this frontal current (<xref ref-type="bibr" rid="CIT20">LaViolette et al 1990</xref>, <xref ref-type="bibr" rid="CIT23">López García et al. 1994</xref>, <xref ref-type="bibr" rid="CIT11">Font et al 1995</xref>, <xref ref-type="bibr" rid="CIT24">Mason and Pascual 2013</xref>) with instabilities, meanders and mesoscale eddies and filaments (e.g. <xref ref-type="bibr" rid="CIT52">Tintoré et al. 1990</xref>, <xref ref-type="bibr" rid="CIT12">García et al. 1994</xref>, <xref ref-type="bibr" rid="CIT34">Pascual et al. 2002</xref>). A major source of this frontal current variability is their interaction with bottom morphology (<xref ref-type="bibr" rid="CIT02">Arnau 2000</xref>, <xref ref-type="bibr" rid="CIT35">Pascual et al. 2004</xref>, <xref ref-type="bibr" rid="CIT45">Rubio et al. 2005</xref>, <xref ref-type="bibr" rid="CIT46">2009</xref>). The tendency of the current to follow isobaths along the shelf break causes an increase in variability when it interacts with the submarine canyons. This has been documented in several sites: the Cap de Creus, Palamós and Blanes Canyons (e.g. <xref ref-type="bibr" rid="CIT26">Masó et al. 1990</xref>, <xref ref-type="bibr" rid="CIT33">Palanques et al. 2005</xref>, <xref ref-type="bibr" rid="CIT08">Flexas et al. 2008</xref>). </p>
			<p>Detailed measurements inside these submarine canyons have shown a complex structure of currents and thermohaline structure variability, as the flow adjusts to the canyon shape (e.g. <xref ref-type="bibr" rid="CIT40">Puig et al. 2000</xref>, <xref ref-type="bibr" rid="CIT33">Palanques et al. 2005</xref>, <xref ref-type="bibr" rid="CIT08">Flexas et al. 2008</xref>). These measurements were obtained mainly through an extensive deployment of moorings, accompanied by hydrographic sampling during deployment, maintenance and recovery periods. However, the tracking of water mass time evolution was not possible in previous measurements, except when additional sensors were installed with the mooring deployment. With this purpose in mind, in 2012 a continuous monitoring of the full water column was designed with the help of an Aqualog profiler. The objective was to explore the temporal and vertical characteristics of the water masses inside the narrow Besòs Canyon, complementing the previous measurements made in other wide canyons of this region. This paper reports the observations carried out during this experiment, focusing on the temporal evolution of the water column properties and particularly fine-scale affects on the water mass variability at the canyon head. In the following sections we first describe the methods used to process the data, and then present the main results and discussion. </p>
		  </sec>
<sec id="S2">
<title>MATERIALS AND METHODS</title>
			
		  <p>The Besòs Canyon is located on the northwestern Mediterranean continental margin, ~20 km offshore of Barcelona (2.52°E, 41.31°N, <xref ref-type="fig" rid="F1">Fig. 1</xref>). The canyon is relatively narrow, with a mean width of around 5 km and steep sidewalls, and its head barely incises the shelf at the ~100 m isobath. Compared with other submarine canyons in the area, it has a very rectilinear and uniform signature almost perpendicular to the southwestward direction of the shelf. The data analysed here were obtained in an experiment consisting in deploying, close to the canyon head at a depth of 808 m, a mooring line equipped with an Aqualog profiling carrier (<xref ref-type="bibr" rid="CIT04">Carlson et al. 2013</xref>, <xref ref-type="bibr" rid="CIT31">Ostrovskii et al. 2013</xref>), a device that goes up and down along the mooring line carrying several probes (<xref ref-type="fig" rid="F2">Fig. 2</xref>). For this experiment, the Aqualog was equipped with a SBE 52-MP CTD probe, a Nortek Aquadopp acoustic current meter and a Seapoint turbidity sensor. The mooring was deployed on 23 March 2012 and recovered on 22 May 2012. Unfortunately, due to a technical failure with the internal memory card, the Aqualog profiler stopped after 11 days of operation, providing data only until 3 April. </p>
		  			<fig id="F1">
				<label>Fig. 1</label>
				<caption>
				<title>Bathymetric chart of the northwestern Mediterranean continental margin showing the location of the Besòs Canyon. The red dot indicates the site where the Aqualog profiler was deployed (2.52°E, 41.31°N).</title>
				</caption>
				<graphic xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="../sm80s1-4322-web-resources/image/sm4322fig1_fmt.jpeg"/>
			</fig>

			<fig id="F2">
				<label>Fig. 2</label>
				<caption>
				<title>Scheme of the mooring line. The inset shows the Aqualog profiler, which moves along the cable of the mooring line.</title>
				</caption>
				<graphic xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="../sm80s1-4322-web-resources/image/sm4322fig2_fmt.jpeg"/>
			</fig>

          <p>The mooring arrangement was designed to scan the vertical range of 62-792 m with six up and down casts per day. The upper shallow range varied slightly, finally stabilizing at 75 dbar, and the maximum attained depth was 801 dbar. The CTD was configured to sample the water column at 0.2 m resolution, whereas the Doppler current meter was set up to sample at 1 m resolution. To proceed with a homogeneous methodology for all the parameters, we first pre-processed the full set of CTD profiles to place temperature and salinity values at the same level as velocity measurements. Then, all the data were cut at the upper part at 78 dbar to have the longest possible time series of the same upper depth profiles. The Aqualog moves along the line at a relative constant speed of 0.17-0.18 m s<sup>–1</sup>, taking 2 hours to complete a full up-down cycle; then it sleeps at the bottom until the next up-down cycle, which starts again after 2 hours. The sampled profiles were interpolated to obtain a regular spatial-temporal sampling, which gives a matrix for the whole sampling period composed of 131 profiles of 723 vertical points (from 23 March to 3 April and from 78 dbar to 801 dbar). Finally, the velocity field was rotated according to the canyon axis orientation to separate along- and across-canyon velocity components. A rotation of 40° anticlockwise was applied to the velocity field components.</p>
			<p>To identify the water mass interfaces we will consider the typical water mass temperature and salinity values presented in the Introduction. This criterion will allow us to identify the interface between AW-WIW and WIW-LIW.</p>
			<p>Double-diffusive mixing is one of the principal small-scale mixing processes that adjusts the density field, diminishing the existing salt and heat excess in adjacent water masses. In order to explore the intensity and presence of small-scale mixing processes, we computed the Turner angle, <italic>Tu</italic> (<xref ref-type="bibr" rid="CIT44">Ruddick 1983</xref>), which describes the likelihood of contacting layers in a stratified water column developing double-diffusive mixing. <italic>Tu</italic> can be defined as a polar angle in the (<math>
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&gt;0 line (Radko 2013), where 
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 are the mean vertical gradients of temperature and salinity, respectively and</p>
 <table-wrap>
		<table frame="hsides" rules="groups">
			  <tr>
			    <td width="95%">
     <math display='block'>
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		  </table></table-wrap>
		  <p>are the coefficients of thermal  expansion and salinity contraction, respectively, of the mean profile. In a more explicit form</p>
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			<p>where the first of the two arguments of the arctangent function is the "<italic>y</italic>”-argument and the second one the "<italic>x</italic>”-argument.</p>
			<p>The Turner angle is quoted in degrees of rotation in such a way that angles between 45° and 90° represent the "salt-finger” regime of double-diffusive convection, with the strongest activity near 90°. Turner angles between –45° and –90° represent the "diffusive” regime of double-diffusive convection, with the strongest activity near –90°. Turner angles between –45° and 45° represent regions where the stratification is stably stratified in both temperature and salinity fields and Turner angles greater than 90° or less than –90° characterize a statically unstable water column (<xref ref-type="bibr" rid="CIT17">IOC 2010</xref>).</p>
			<p>Finally, to analyse whether the mixing was diapycnal or isopycnal, we used the (<italic>β</italic><italic>S</italic>’, <italic>α</italic><italic>T</italic>’) plane, where <italic>α</italic><italic>T</italic>’ and <italic>β</italic><italic>S</italic>’ are the temperature and salinity anomalies normalized by the thermal expansion (<italic>α</italic>) and salinity contraction (<italic>β</italic>) coefficients (<xref ref-type="bibr" rid="CIT54">Zhurbas et al. 1987</xref>). It was shown by <xref ref-type="bibr" rid="CIT36">Pingree (1972)</xref> that for fine structure anomalies resulting from isopycnal advection, <italic>α</italic><italic>T</italic>’= <italic>β</italic><italic>S</italic>’, and for fine structure inhomogeneities resulting from vertical mixing, <italic>T</italic>’/<italic>S</italic>’ = <italic>T<sub>Z</sub></italic>/<italic>S<sub>Z</sub></italic> (where <italic>T<sub>Z</sub></italic> and <italic>S<sub>Z</sub></italic> are the mean vertical gradients in the investigated layer). The work of Pingree can be used to relate the complementary views of Turner angle and Zhurbas’ analysis. </p>
			<p>After calculating <italic>Tu</italic> to determine the spatial scales at which small-scale mixing can occur, a spatial-temporal decomposition through empirical orthogonal functions (EOFs) of the anomaly of temperature and salinity was performed to see the main modes of variability in the sampled data. For each profile we removed the mean and normalized the anomalies with their standard deviation. EOFs were then computed using a singular value decomposition algorithm of the covariance matrix, retaining modes with associated eigenvectors significantly different from zero (<xref ref-type="bibr" rid="CIT30">Navarra and Simoncini 2010</xref>). </p>
			
		</sec>
<sec id="S3">
<title>RESULTS</title>
			
<sec id="S3.1">
<title>Thermohaline structure</title>
			
		  <p><xref ref-type="fig" rid="F3">Figure 3</xref> shows the thermohaline properties of the full set of profiles. The three characteristic Mediterranean Sea water masses can be identified both in the θ-S diagram (<xref ref-type="fig" rid="F3">Fig. 3A</xref>) and in the water column thermohaline distribution and variability (<xref ref-type="fig" rid="F3">Fig. 3B-D</xref>). The upper 100- to 150-metre layer is occupied by a relatively warm and less saline surface water mass corresponding to modified AW. In the depth range between 150 and 500-600 m, a clear signal of WIW was found. As previously mentioned, this water is formed by winter convection of cold surface water and is characterized by relatively low temperatures and salinity. Below the WIW between 500-600 m and down to at least 800 m water depth, the warmer and salty LIW was observed. </p>
		  			<fig id="F3">
				<label>Fig. 3</label>
				<caption>
				<title>A, potential temperature-salinity diagram of the whole set of profiles acquired by the Aqualog. Black lines indicate density levels in sigma-t units. The colour scale indicates the pressure level in db. Panels B, C and D show the time evolution of the potential temperature, salinity and density, respectively. The black line in each B, C and D plot shows the separation between WIW and LIW.</title>
				</caption>
				<graphic xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="../sm80s1-4322-web-resources/image/sm4322fig3_fmt.jpeg"/>
			</fig>

<p>During the 11 days of sampling, the boundary between modified AW and WIW varied from ~150 to ~300 m water depth, showing a 4- to 6-day oscillatory pattern, which was mostly noticed in the thermal structure. The boundary between WIW and LIW oscillated at much higher frequencies, with vertical isotherm and isohaline fluctuations of 100-150 m occurring within the semi-diurnal and local inertial band (18 h) and more evident at the beginning of the deployment (<xref ref-type="fig" rid="F3">Fig. 3</xref>).</p>
			
		 </sec>
<sec id="S3.2">
<title> Hydrodynamic variability</title>
			
		  <p>The temporal evolution of the velocity profiles associated with these three water masses is shown in <xref ref-type="fig" rid="F4">Figure 4</xref>. The velocity fields show very different behaviour between the upper and the lower layers and between the along-canyon (<xref ref-type="fig" rid="F4">Fig. 4A</xref>) and the across-canyon (<xref ref-type="fig" rid="F4">Fig. 4B</xref>) components. There is a predominance of negative cross-canyon currents (i.e. towards the SW) in the upper levels, with almost no reverse events during most of the measurement period. This was expected according to the general along-slope behaviour of the frontal current and because the upper levels are unaffected by the canyon morphology. On the other hand, at deeper layers (below 300 m water depth) the currents appeared to be affected by the canyon rims and relatively intense velocities polarized along the canyon axis were observed, with alternating periods of up- and down-canyon flows. Some events around 26 and 28 March were also associated with comparable cross-canyon components, but in the opposite direction to the upper layer, especially for the event of 28 March. An event which is particularly noteworthy appeared between 24 and 25 March. It shows a barotropic up-canyon response over the first 600 m in the down-canyon direction coinciding with the WIW-LIW interface. Then, the AW-WIW deepens and the flow in the WIW layer changes from up- to down-canyon direction simultaneously with the flow changes of the LIW layer in the opposite sign, within the three-layer structure. This response is not so similar in other events (28 March and 2 April), although an intensification of part of the WIW layer (300-500) is seen in the up-canyon direction when the flow is intensified at the surface.</p>
		  			<fig id="F4">
				<label>Fig. 4</label>
				<caption>
				<title>Time evolution of velocity (m s<sup>–1</sup>) profiles: A, along-canyon axis component and B, cross-canyon axis component (positive values are towards NE and up-canyon).</title>
				</caption>
				<graphic xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="../sm80s1-4322-web-resources/image/sm4322fig4_fmt.jpeg"/>
			</fig>

<p>Another interesting observation is that up- and down-canyon flows are shorter and appear to be at higher frequency than the flows in the upper layer. In general, it can be appreciated that LIW velocities vary at a higher frequency in the along-canyon component than surface layers and cross canyon components, in agreement with the fluctuations of the isotherms and isohalines (<xref ref-type="fig" rid="F3">Figs 3</xref> and <xref ref-type="fig" rid="F4">4</xref>).</p>
			<p>As stated above, deeper in the water column and within the submarine canyon confinement, the WIW-LIW interface exhibits excursions of about 100-150 m. These motions are associated with relatively up- and down-canyon–enhanced current events (up to 15-20 cm s<sup>–1</sup> at 450-500 and 800 m depths) along the canyon axis. To explore the nature of these oscillations, a spectrogram of the along-canyon component was computed. <xref ref-type="fig" rid="F5">Figure 5A</xref> shows the spectrogram of the along-canyon velocity component for all depths. It shows a clear dependency of the frequency with the vertical coordinate. It can be appreciated in <xref ref-type="fig" rid="F5">Figures 5B</xref> and <xref ref-type="fig" rid="F5">5C</xref> that there are typical frequencies at selected depths (450 m and 800 m). The confidence levels in <xref ref-type="fig" rid="F5">Figures 5B</xref> and <xref ref-type="fig" rid="F5">5C</xref> indicate that the analysis is not very robust from a statistical point of view, which can be understood if one takes into account the excess of degrees of freedom in the time series (due to its shortness). Moreover, although the broad peaks indicate an absence of a clear characteristic process together with a lack of resolution, they are centred around some characteristic bands. Along-canyon current oscillations within the WIW layer show the highest spectral density around the local inertial period (18 h) and the semi-diurnal tidal component, although lower frequencies around 30 h also coexist (<xref ref-type="fig" rid="F5">Fig. 5B</xref>). Within the LIW and close to the seafloor, the spectrogram shows a much broader peak, which goes from diurnal to a maximum spectral density around 50 h (<xref ref-type="fig" rid="F5">Fig. 5C</xref>). The cross-canyon axis spectral component near the surface (not shown) has characteristic periods close to the inertial oscillations.</p>
						<fig id="F5">
				<label>Fig. 5</label>
				<caption>
				<title>A, raw spectrogram of the along-canyon velocity component. Spectrograms at 450 m (B) and 780 m (C) smoothed with a Daniell’s window of six terms. Dashed lines represent 95% confident levels.</title>
				</caption>
				<graphic xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="../sm80s1-4322-web-resources/image/sm4322fig5_fmt.jpeg"/>
			</fig>

</sec>
<sec id="S3.3">
<title>Small-scale mixing</title>
			
		  <p>The three-layer structure identified over time creates favourable conditions for small-scale mixing, which homogenizes the thermohaline contrasts in the contacting layers, offsetting excesses/deficiencies of heat and salt. The double-diffusion process is observed in this case and we use <italic>Tu</italic> to characterize the favourable conditions for thermal diffusion and salt-fingering.</p>
			<p>The time series of <italic>Tu</italic> profiles are presented in <xref ref-type="fig" rid="F6">Figure 6</xref>. It can be observed that the small-scale mixing conditions are changing, with a preference for salt-fingering near the interface between surface AW and WIW (45º&lt;<italic>Tu</italic>&lt;90º) and thermal diffusion in the interface between LIW and WIW (-90º&lt;<italic>Tu</italic>&lt;-45).</p>
						<fig id="F6">
				<label>Fig. 6</label>
				<caption>
				<title>Turner angle for data sampled, values in the range [–90, 90].</title>
				</caption>
				<graphic xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="../sm80s1-4322-web-resources/image/sm4322fig6_fmt.jpeg"/>
			</fig>

<p>The isopycnal or diapycnal nature of small-scale mixing can be studied through the analysis of the observed fine structure thermohaline anomalies. As explained in the previous section, once the anomalies are calculated, to characterize the observed variability of water masses, EOFs were obtained for the anomalies of the normalized salinity and temperature profiles. The first mode of salinity and temperature represents 13% of the total anomaly variance, the second mode 9.7% and the third mode 7.1%. This means that the most representative EOFs accommodate around 30% of the total anomaly variance (modes not shown). Although the variance represented for these modes is not very high compared with the total variance, the separation of the modes allows us to analyse the different scales. Using these scales we can apply the methodology of <xref ref-type="bibr" rid="CIT54">Zhurbas et al. (1987)</xref> to assess the role of fine-scale mixing processes in the AW-WIW and WIW-LIW interfaces. In our case, the second EOF mode effectively represents the three-layer structure in the anomaly part of the profiles. To assess the role of the AW-WIW and WIW-LIW interfaces in the small-scale mixing processes, we represent the second EOF mode using a <italic>βS</italic>’, <italic>αT</italic>’-plane representation (<xref ref-type="fig" rid="F7">Fig. 7</xref>). We can observe how this mode is aligned with the bisector, which indicates an isopycnal mode of mixing. Thus, this analysis reveals a predominance of stable-diffusive and isopycnal mixing over diapycnal or unstable mixing. </p>
			<fig id="F7">
				<label>Fig. 7</label>
				<caption>
				<title>Second EOF mode of the anomaly of temperature and salinity fields in the range 500-700 m depth (the range of depths at which the WIW-LIW interface is located over time).</title>
				</caption>
				<graphic xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="../sm80s1-4322-web-resources/image/sm4322fig7_fmt.jpeg"/>
			</fig>

</sec></sec>
<sec id="S1">
<title>DISCUSSION</title>
			
		  <p>Progress in scientific and technological aspects during the past years has revealed many natural phenomena inside submarine canyons (<xref ref-type="bibr" rid="CIT53">Xu 2011</xref>). High-resolution sampling in both time and space is needed to resolve and to analyse the scales of the processes inside canyons. The dynamics of water circulation within the submarine canyons incised on the NW Mediterranean continental margin has been previously studied using moored current meters in various research projects mainly devoted to the quantification of sedimentary fluxes. These include observations at the Grand-Rhône Canyon (<xref ref-type="bibr" rid="CIT06">Durrieu de Madron 1994</xref>), the Foix Canyon (<xref ref-type="bibr" rid="CIT40">Puig et al. 2000</xref>), the Palamós Canyon (<xref ref-type="bibr" rid="CIT33">Palanques et al. 2005</xref>, <xref ref-type="bibr" rid="CIT27">Martín et al. 2007</xref>), the Cap de Creus Canyon (<xref ref-type="bibr" rid="CIT41">Puig et al. 2008</xref>, <xref ref-type="bibr" rid="CIT28">Martín et al. 2013</xref>) and the Blanes Canyon (<xref ref-type="bibr" rid="CIT08">Flexas et al. 2008</xref>, <xref ref-type="bibr" rid="CIT55">Zúñiga et al. 2009</xref>, <xref ref-type="bibr" rid="CIT22">López-Fernandez et al. 2013</xref>). However, these current meter time series, which were generally accompanied by temperature, salinity and turbidity measurements, provided very localized and partial information on the hydrodynamics of the various water masses interacting with the canyon. Even in cases in which the horizontal spatial scale was quite well addressed (by deploying several moorings along the canyon axis and on its flanks), the variability in the vertical spatial scale (throughout the water column) was poorly sampled. This was because few current meters were installed on each mooring array, and in most cases only near-bottom measurements were reported.</p>
			<p>To provide the missing vertical spatial scale information, in this work we have presented the data provided by an Aqualog moored profiling carrier deployed at the head of the Besòs Canyon (NW Mediterranean). The experiment was relatively short and does not allow us to make generalizations on all the observed characteristics relative to the interaction of the canyon and the regional flow configuration. For this reason we have focused on aspects related to the smaller scales associated with the variability of the water masses inside the canyon.</p>
			<p>The vertical positions of the limits of the three water masses found inside the canyon show intense, quasi-oscillatory vertical displacements. The limit between the modified AW and the WIW shows a 4- to 6-day oscillation (<xref ref-type="fig" rid="F3">Fig. 3</xref>), which appears sometimes related to intensifications of the geostrophic current in the along-slope (towards SW) direction (<xref ref-type="fig" rid="F4">Fig. 4B</xref>) associated with a deepening of the AW-WIW interface. Not all these events are similar with respect to the vertical structure. One appears to be structured in a three-layer response, while the others are more confined to the upper and WIW layers. </p>
			<p>The main surface currents observed are in the across-canyon direction consistent with the along-shelf/slope frontal current that characterized the regional circulation (<xref ref-type="bibr" rid="CIT10">Font et al. 1988</xref>). However, the predominance of currents along the canyon axis is a consequence of the narrowness of the canyon topography, as was observed in the similarly narrow Foix Canyon (<xref ref-type="bibr" rid="CIT40">Puig et al. 2000</xref>). The Besòs Canyon has a characteristic width of about 5 km, which is smaller than the typical Rossby radius of deformation in the area (around 12 km), preventing the adjustment of the frontal flow to the canyon morphology, as has been described in the literature (e.g. <xref ref-type="bibr" rid="CIT19">Klinck 1996</xref>, <xref ref-type="bibr" rid="CIT18">Jordi et al. 2005</xref>). In wider canyons, such as the Blanes or Palamós Canyons located several kilometres upstream, the main currents across the canyon axis adjust to the shape of the canyon walls (<xref ref-type="bibr" rid="CIT33">Palanques et al. 2005</xref>). In wider canyons, numerical simulations and observational measurements show that the flow adjustment for similar configurations (right-bounded flow) produces a downwelling flow in the upper layers on the upstream wall and an upwelling flow on the downstream wall (<xref ref-type="bibr" rid="CIT19">Klinck 1996</xref>, <xref ref-type="bibr" rid="CIT18">Jordi 2005</xref>). </p>
			<p>The occurrence of flow intensification and deepening of the upper layer (2-4 days) contrasts with the shorter variability of the WIW-LIW interface. Without additional information it is difficult to decide which process is responsible for such variability. Meandering of the frontal current, eddies around the canyon, low-frequency meteorological forcing and propagation of topographic waves along the shelf have been proposed in this area (e.g. <xref ref-type="bibr" rid="CIT40">Puig et al. 2000</xref>, <xref ref-type="bibr" rid="CIT33">Palanques et al. 2005</xref>). Similar low-frequency fluctuations have also been described elsewhere in the northwestern Mediterranean, and have been identified as topographic waves (<xref ref-type="bibr" rid="CIT05">Crépon et al. 1982</xref>, <xref ref-type="bibr" rid="CIT50">Sammari et al. 1995</xref>, <xref ref-type="bibr" rid="CIT07">Durrieu de Madron et al. 1999</xref>).</p>
			<p>At smaller scales, the analysis of the results indicate that this variability of the AW-WIW and WIW-LIW interface is characterized by <italic>Tu</italic> angles compatible with salt-fingering in the AW-WIW interface and thermal diffusion in the WIW-LIW interface. After the split of the first three anomaly modes, we also found that isopycnal mixing processes can occur. Although the relative contribution of the selected EOF second mode to the total variance is not so high, it shows a clear signature of three layers and then allows us to use a (<italic>β</italic><italic>S</italic>’, <italic>α</italic><italic>T</italic>’)-plane representation to find that isopycnal processes are dominant in it. Further investigations should be conducted to understand properly the scales implied in isopycnal processes at the studied scales, which are the ones that our analysis reveals as the most influential. However, the coupling along modes analysed (shown by the variance spread along the EOFs) indicates a join contribution of these processes to the measured phenomena, without a clear dominance of a single, driven process.</p>
			<p>To summarize the experiments presented here, the observations of water masses and currents inside the Besòs Canyon have revealed an unexpected rich internal structure that could not be seen with traditional surveys with moorings or ship cruises, as has been done in nearby canyons in the same region. The interaction of the shelf frontal current and a narrow canyon is quite complex in terms of the structure and variability of water masses and currents. Major vertical excursions at short time scales were observed, associated with enhanced along- and across-canyon events near the semi-diurnal tidal, inertial and longer temporal scales. These events sometimes appeared in the velocity field, having a spotty character, which may also be the signature of quasi-inertial oscillations generated by the adjustment process of the frontal current over the canyon or by the meandering of the frontal current, combined with signal amplifications towards the canyon head region. The intermittent nature of these events, with different vertical responses, and the lack of a dominant mode of variability may be due to the mooring location close to the head of the canyon. The constrained shape of the Besòs Canyon head (narrow and steep) probably favours a response, which is the contribution of many short-term events of different natures that spread the variance among many modes. The similar absence of a clear spectral signature in near-bottom currents was also noticed at the head of the Foix Canyon (<xref ref-type="bibr" rid="CIT40">Puig et al. 2000</xref>), where current reversals were more frequent than at deeper canyon sites that have shorter along-canyon axis displacements. Finally, the small-scale mixing processes at the second EOF mode scale shows an isopycnal nature. However, further analysis should be carried out to quantify the role of each process (isopycnal or diffusive mixing) in small-scale mixing. Unfortunately, the short duration of the deployment and the experimental configuration with only one mooring did not allow us to provide robust and statistically significant analysis, and further intensive observations should be carried out in the near future. </p>
			
		  </sec></body>
		  <back>
<ack>
<title>ACKNOWLEDGEMENTS</title>
			
		  <p>The measurements with "Aqualog” were performed in the framework of the joint Spanish-Russian project ‘Variabilidad Intraestacional y Dinámica’ (VID)(2010RU0063) ‘Intraseasonal variability of water dynamics, thermohaline structure and vertical exchange in the northeastern Black Sea and the northwestern Mediterranean: a comparative study’. This work was supported by the projects VA-DE-RETRO (CTM2014-56987-P), funded by the Spanish government. EU funded J.S. through the project Marine-Vectors (FP7-KBBE 266445). J.S. also acknowledges a CSIC JAE-Doc contract co-funded by the ESF. We thank the the crew of the R/V <italic>García del Cid</italic> and Maribel Lloret, José Pozo and Jacobo Martín for their help in the mooring deployment and recovery operations. We also thank two anonymous referees and the editor of <italic>Scientia Marina</italic> for comments that helped improve the manuscript.</p>
			
</ack>
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